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Exp Neurobiol 2023; 32(6): 410-422
Published online December 31, 2023
https://doi.org/10.5607/en23027
© The Korean Society for Brain and Neural Sciences
Wonseok Son1†, Hui Su Jeong2†, Da Eun Nam1, Ah Jin Lee1, Soo Hyun Nam3, Ji Eun Lee2,4*, Byung-Ok Choi2,3,5* and Ki Wha Chung1*
1Department of Biological Sciences and BK21 Team for Field-oriented BioCore Human Resources Development, Kongju National University, Gongju 32588, 2Department of Health Sciences and Technology, Samsung Advanced Institute for Health Sciences & Technology, Sungkyunkwan University, Seoul 06351, 3Cell and Gene Therapy Institute, Samsung Medical Center, Seoul 06351, 4Samsung Biomedical Research Institute, Samsung Medical Center, Seoul 06351, 5Department of Neurology, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul 06351, Korea
Correspondence to: *To whom correspondence should be addressed.
Ji Eun Lee, TEL: 82-2-3410-6129, FAX: 82-2-3410-0534
e-mail: jieun.lee@skku.edu
Byung-Ok Choi, TEL: 82-2-3410-1296, FAX: 82-2-3410-0052
e-mail: bochoi77@hanmail.net
Ki Wha Chung, TEL: 82-41-850-8506, FAX: 82-41-850-0957
e-mail:kwchung@kongju.ac.kr
†These authors contributed equally to this article.
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
Rab40 proteins are an atypical subgroup of Rab GTPases containing a unique suppressor of the cytokine signaling (SOCS) domain that is recruited to assemble the CRL5 E3 ligase complex for proteolytic regulation in various biological processes. A nonsense mutation deleting the C-terminal SOCS box in the RAB40B gene was identified in a family with axonal peripheral neuropathy (Charcot-Marie-Tooth disease type 2), and pathogenicity of the mutation was assessed in model organisms of zebrafish and Drosophila. Compared to control fish, zebrafish larvae transformed by the human mutant hRAB40B-Y83X showed a defective swimming pattern of stalling with restricted localization and slower motility. We were consistently able to observe reduced labeling of synaptic markers along neuromuscular junctions of the transformed larvae. In addition to the neurodevelopmental phenotypes, compared to normal hRAB40B expression, we further examined ectopic expression of hRAB40B-Y83X in Drosophila to show a progressive decline of locomotion ability. Decreased ability of locomotion by ubiquitous expression of the human mutation was reproduced not with GAL4 drivers for neuron-specific expression but only when a pan-glial GAL4 driver was applied. Using the ectopic expression model of Drosophila, we identified a genetic interaction in which Cul5 down regulation exacerbated the defective motor performance, showing a consistent loss of SOCS box of the pathogenic RAB40B. Taken together, we could assess the possible gain-of-function of the human RAB40B mutation by comparing behavioral phenotypes in animal models; our results suggest that the mutant phenotypes may be associated with CRL5-mediated proteolytic regulation.
Keywords: Peripheral neuropathy, RAB40B, SOCS box, Zebrafish, Drosophila
The human genome comprises more than 60 Rab genes that make up one GTPase family; these genes have been studied mostly as molecular switches in intracellular membrane trafficking in various systems [1, 2]. Rab GTPases are key regulators also in animal nervous systems, exclusively in neurons across cell bodies to synapses; preferential subcellular localizations of each Rab protein are unique [3, 4]. Alterations of these Rab GTPases have been recognized to be associated with virtually all neuronal activities in health and disease. A well-known example is
Rab40 proteins, consisting of four paralog members including RAB40B in humans, are an atypical subgroup of Rab proteins with unique structural and functional features. Besides the GTPase domain of the Rab family, Rab40 proteins are distinguished by an unusual domain of suppressor of cytokine signaling (SOCS) box in the C terminal part [9-11]. Group of proteins containing the SOCS box domain have typically been studied as adaptors that recruit substrates into a specific ubiquitination process of the Cullin-RING ligase 5 (CRL5) complex [12, 13]. A variety of SOCS box-containing substrate receptors are involved in each specific target degradation in various biological processes. Four important components of the E3 ligase complex are the CUL5 scaffold protein, elongin B/C, SOCS box-containing adaptors, and ring box protein 2 (RBX2) [12-14].
Among the four paralog members of human Rab40 proteins, RAB40B and RAB40C show preferentially higher expression in the nervous system and muscle tissues. However, little is known about the cellular functions of the Rab40 proteins beyond those structural features, except from studies on cellular adhesion and migration of several carcinoma cell lines. Both human RAB40A and RAB40C were shown to form complexes with CUL5 for proteasomal degradation of p21-activated kinase 4 (PAK4) and receptor for activated C kinase 1 (RACK1), respectively [10, 15]. Similarly, RAB40B-CUL5-dependent ubiquitination was found to regulate epithelial protein lost in neoplasm (EPLIN) localization and promote cell migration and invasion by altering focal adhesion and cytoskeletal dynamics in breast cancer cells [9, 16]. Other components of the CRL5 complex have also been linked to neuronal development, such as PAK4 kinase or RBX2-CUL5 complexes in proper axonal growth or neuronal migration [17, 18]. Thus, the overlapping tissue expression of Rab40s suggests a probability that those proteins may also be involved in neurodevelopmental and/or degenerative processes in the nervous system.
In the present study, we identified one
This study examined a Korean dominant CMT2 family with seven members including two affected individuals (family ID: FC162; Fig. 1A). Informed consent was obtained from all participants according to the protocol approved by the Institutional Review Board of Sungkyunkwan University, Samsung Medical Center (2014-08-057-002) and Kongju National University (KNU-IRB-2018-62).
Neuromuscular clinical phenotypes including motor and sensory impairments, deep tendon reflexes, and muscle atrophy were obtained in the standardized methods. Strengths of flexor and extensor muscles were assessed manually using the standard medical research council (MRC) scale [19]. To determine the severity of physical disability, we measured the functional disability scale (FDS), CMT neuropathy score version 2 (CMTNSv2), CMT examination score (CMTES), Rasch-modified CMTNSv2 (CMTNSv2-R), and Rasch-modified CMTES (CMTES-R) [20-23]. Sensory impairments were assessed in terms of the level and severity of pain, temperature, vibration, and position. Age at onset was determined by asking patients for their ages when symptoms, i.e., distal muscle weakness, foot deformity, or sensory change, first appeared.
Motor and sensory conduction velocities of median, ulnar, peroneal, and sural nerves were determined by standard methods using the surface stimulation and recording electrodes. Motor nerve conduction velocities (MNCVs) and compound muscle action potentials (CMAPs) of median nerves were determined by stimulating the elbow and wrist. In the same way, the MNCVs and CMAPs of peroneal nerves were determined by stimulating the knee and ankle. Amplitudes of CMAP were measured from baseline to negative peak values. Sensory nerve conduction velocities (SNCVs) were obtained over a finger-wrist segment from ulnar nerves and were also recorded for sural nerves. Sensory nerve action potential (SNAP) amplitudes were measured from positive peaks to negative peaks.
Total DNA was extracted from blood obtained from participants using a HiGene Genomic DNA Prep Kit (Biofact, Daejeon, Korea). Exome capture and next generation sequencing were carried out using a SureSelect Human All Exon 50M kit (Agilent Technologies, Santa Clara, CA, USA) and HiSeq 2500 Genome Analyzers (Illumina, San Diego, CA, USA), respectively. Frequencies of rare alleles from the whole exome sequencing (WES) data were obtained from public human genome databases of the 1000 Genomes Project (http://www.1000genomes.org), the Genome Aggregation Database (https://gnomad.broadinstitute.org), and the Korean Reference Genome Database (http://coda.nih.go.kr/coda/KRGDB/index.jsp). Possible pathogenic variations were basically evaluated according to the American College of Medical Genetics and Genomics-Associations for Molecular Pathology (ACMG-AMP) guidelines (https://wintervar.wglab.org). Candidate pathogenic mutations found in the FC162 family were confirmed by Sanger sequencing of all participants.
Zebrafish (AB strain) were maintained with a cycle of 13-h light and 11-h dark in an automatic breeding system (Genomic-Design, Daejeon, Korea) at 28.5°C and pH 7.0~7.9, according to animal research protocols approved by the Institutional Animal Care and Use Committee of Samsung Biomedical Research Institute and Sungkyunkwan University (IACUC#20201008001 and IACUC#20200916001). The mutant
Moving patterns and velocity of zebrafish larvae at 84 hours post-fertilization (hpf) were analyzed using DanioVision (Noldus, Wageningen, Netherlands). Behavioral analysis was performed using light stimulation in 1 ml zebrafish breeding media. Control zebrafish or
Zebrafish larvae at 84 hpf were fixed in 4% paraformaldehyde in 0.1 M PBS overnight at 4°C. The larvae were permeabilized with 0.5% TritonX-100 in 0.1 M PBS (PBST) for 15 min at room temperature and washed with 1× PBS three times and blocked in 1% DMSO and 1% BSA in PBST containing 4% normal goat serum at room temperature for 1 hr. The following primary antibodies were used for incubation: mouse anti-SV2 (1:50; Developmental Studies Hybridoma Bank, Iowa City, IA, USA) and Alexa 647-conjugated α-BTX (B35450, 1:150; Invitrogen-ThermoFisher Scientific, Carlsbad, CA, USA) at 4°C overnight in blocking solution. After washing three times with PBST, larvae were treated with Alexa Fluor 488-conjugated secondary antibodies (A11001, 1:250; Life Technologies, Carlsbad, CA, USA) for 2 hr. at room temperature. The zebrafish larvae were mounted on slides with mounting solution containing n-propyl gallate and images were captured and analyzed with a confocal microscope (LSM 700; Carl Zeiss, Jena, Germany)/Zeiss ZEN imaging software and ImageJ (NIH, Bethesda, MD, USA). NMJs were analyzed by measuring the proportion of areas with merged yellow signals within the region of interest (ROI) of the zebrafish trunk.
Human
Locomotion performance was measured by a climbing assay that uses the negative geotaxis behavior of flies [35]. Flies were collected daily for each genotype, put into groups of 10 to 15 individuals, and transferred to a 30°C chamber to induce transgene expression. Each group was assessed for climbing ability 2, 8, and 15 days after collection. Flies were put into test tubes of 18 cm length. After tapping tubes on a mouse pad to force out flies at the bottom, flies were allowed to climb the wall for one minute. Total numbers of flies that climbed over the marked height of 11 cm in the test tubes in three repeated tests were counted to calculate the climbing percentage. Four or six groups per genotype were assessed to calculate means and standard deviations.
In one CMT family (family ID: FC162), two individuals of mother and son were affected with axonal peripheral neuropathy (II-3 and III-2 in Fig. 1A). The clinical and electrophysiological features of the patients are shown in Table 1. Onset ages were 13 and 3 years old in mother and son, respectively. Muscle weakness and atrophy started and predominated in the distal portions of legs, and were noted to a lesser extent distally in upper limbs. Vibration sense was reduced to a greater extent than pain in the III-2 patient. Foot deformity and absent deep tendon reflex were shown in both patients, but scoliosis was found only in the mother (II-3). Functional disability was similar (FDS: 3), and CMTNSv2 was in the moderate category in both patients (17 and 13, respectively). However, when considering the disease duration, the son was more severely affected than his mother. Motor and sensory conduction studies were carried out in both patients (Table 1). Electrophysiological findings confirmed that both patients were axonal type of CMT2 neuropathy.
In the mutation screen by WES for the FC162 family, we identified a nonsense mutation in the
In sequence comparison of human RAB40B to zebrafish and
The
Capped mRNAs of human
Based on the larval motility defect, we examined neurodevelopmental phenotypes induced by the
A stable transgenic model of the human
Semi-lethality was shown by ubiquitous expressions of both the wild and mutant
Parallel to the motility test of zebrafish transformants, we examined the larval locomotive abilities of the progeny of ectopic expressions of
Then, in adult animals, we tested the dominant pathogenicity of the human mutation to find similar degenerative hallmarks by its ectopic expression in
Next, we sought to determine whether the progressive motor defect was of neuron-origin. Several specific GAL4 drivers were introduced for ectopic expression in the nervous system, such as pan-neuronal GAL4s,
We also tested expression in glial cells, the other cell type in the nervous system. A similar behavioral defect was found when the pan-glial GAL4,
The unique SOCS box domain of Rab40 proteins induces physical interactions with CUL5 and other essential components of the CRL5 complex to target specific substrates of the ubiquitination system [12, 13]. The pleiotropic developmental functions of
Since ubiquitous downregulation of
In this study using ectopic expression models of zebrafish and
Despite the successful establishment of animal models for the
In the present study, we utilized zebrafish transformants and
Rab40 proteins, including human RAB40B, share a unique C-terminal SOCS box domain, which is a key motif to assemble the CRL5 ubiquitin ligase complex [12, 13]. Thus, mutations across the binding motif may cause a dominant-negative result against proteolytic regulation of specific targets of the Rab40 adaptors [9, 10]. In this study, we identified a genetic interaction between ectopic expression of the SOCS box-deficient
In the
Taken together, our results so far evidence a probable pathogenic gain-of-function of the
This study was supported by the National Research Foundation of Korea (2021R1A4A2001389, 2021R1A6A3A123041249, 2021R1A2C3004572, and 2022R1I1A2068995), Korean Health Technology R&D Project, Ministry of Health and Welfare (HR22C1363), and Future Medicine 2030 Project of the Samsung Medical Center (SMX122005).
Clinical and electrophysiological features in CMT2 patients of FC162 family
Phenotypes/patients (sex) | II-3 (female) | III-2 (male) |
---|---|---|
Age at onset/examination (years) | 13/42 | 3/8 |
Muscle weakness in limb (upper/lower)a | ++/+++ | +/+++ |
Muscle atrophy | Moderate | Mild |
Foot deformities | Yes | Yes |
Pinprick sense in limb (upper/lower) | Reduced/reduced | Mildly reduced/reduced |
Vibration in limb (upper/lower) | Reduced/reduced | Mildly reduced/reduced |
Deep tendon reflex (knee and ankle jerk) | Absent | Absent |
Scoliosis | Yes | Yes |
Pyramidal sign | No | No |
Brainstem auditory evoked potential | Not done | Normal |
FDS | 3 (walking difficulty) | 3 (walking difficulty) |
CMTNSv2/CMTNSv2-R | 17 (moderate)/22 (severe) | 13 (moderate)/18 (moderate) |
CMTES/CMTES-R | 15 (severe)/19 (severe) | 12 (moderate)/16 (moderate) |
Motor nerve conductionb | ||
Median CMAP (mV)/MNCV (m/s) | 13.5/42.5 | 11.8/46.3 |
Peroneal CMAP (mV)/MNCV (m/s) | Absent/absent | Absent/absent |
Sensory nerve conductionb | ||
Ulnar SNAP (μV)/SNCV (m/s) | 7.2/28.2 | 12.9/29.8 |
Sural SNAP (μV)/SNCV (m/s) | Absent/absent | Absent/absent |
CMAP, compound muscle action potential; CMTES, CMT examination score; CMTES-R, Rasch-modified CMTES; CMTNSv2, CMT neuropathy score version 2; CMTNSv2-R, Rasch-modified CMTNSv2; FDS, functional disability scale; MNCV, motor nerve conduction velocity; SNAP, sensory nerve action potential; SNCV, sensory nerve conduction velocity.
aUpper limb: + and ++ = intrinsic hand weakness 4/5 and < 4/5 on the MRC scale. Lower limb: + and ++ = ankle dorsiflexion 4/5 and < 4/5 on the MRC scale; +++ = proximal weakness.
bNormal voltages of motor median nerve ≥6 mV, peroneal nerve ≥1.6 mV, sensory ulnar nerve ≥7.9 μV, and sural nerve ≥6.0 μV; normal conduction velocities of motor median nerve ≥50.5 m/s, peroneal nerve ≥41.2 m/s, sensory ulnar nerve ≥37.5 m/s and sural nerve ≥32.1 m/s.